Mercurial > repos > ebi-gxa > scanpy_integrate_bbknn
comparison scanpy-integrate-bbknn.xml @ 15:c9da9192eee5 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:42:00 +0000 |
| parents | 12fc7e093094 |
| children |
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| 14:12fc7e093094 | 15:c9da9192eee5 |
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| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_integrate_bbknn" name="Scanpy BBKNN" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> | 2 <tool id="scanpy_integrate_bbknn" name="Scanpy BBKNN" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
| 3 <description>batch-balanced K-nearest neighbours</description> | 3 <description>batch-balanced K-nearest neighbours</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 122 <test> | 122 <test> |
| 123 <param name="input_obj_file" value="find_cluster.h5"/> | 123 <param name="input_obj_file" value="find_cluster.h5"/> |
| 124 <param name="input_format" value="anndata"/> | 124 <param name="input_format" value="anndata"/> |
| 125 <param name="output_format" value="anndata"/> | 125 <param name="output_format" value="anndata"/> |
| 126 <param name="batch_key" value="louvain"/> | 126 <param name="batch_key" value="louvain"/> |
| 127 <output name="output_h5" file="bbknn.h5" ftype="h5" compare="sim_size"/> | 127 <output name="output_h5" file="bbknn.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/> |
| 128 </test> | 128 </test> |
| 129 <test> | 129 <test> |
| 130 <param name="input_obj_file" value="find_cluster.h5"/> | 130 <param name="input_obj_file" value="find_cluster.h5"/> |
| 131 <param name="input_format" value="anndata"/> | 131 <param name="input_format" value="anndata"/> |
| 132 <param name="output_format" value="anndata"/> | 132 <param name="output_format" value="anndata"/> |
| 133 <output name="output_h5" file="bbknn_copy.h5" ftype="h5" compare="sim_size"/> | 133 <output name="output_h5" file="bbknn_copy.h5" ftype="h5" compare="sim_size" delta_frac="0.1"/> |
| 134 </test> | 134 </test> |
| 135 </tests> | 135 </tests> |
| 136 | 136 |
| 137 <help><![CDATA[ | 137 <help><![CDATA[ |
| 138 .. class:: infomark | 138 .. class:: infomark |