Mercurial > repos > ebi-gxa > scanpy_integrate_mnn

diff scanpy_macros2.xml @ 14:ff6decc0f432 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:26 +0000
parents e9788746e0f6
children
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--- a/scanpy_macros2.xml	Fri Oct 13 14:08:05 2023 +0000
+++ b/scanpy_macros2.xml	Tue Feb 27 16:43:26 2024 +0000
@@ -1,9 +1,11 @@
 <macros>
-  <token name="@TOOL_VERSION@">1.8.1</token>
+  <token name="@TOOL_VERSION@">1.9.3</token>
   <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token>
-  <token name="@PROFILE@">18.01</token>
+  <token name="@PROFILE@">20.09</token>
   <token name="@VERSION_HISTORY@"><![CDATA[
 **Version history**
+1.9.301+galaxy0: Moves to Scanpy 1.9.3
+
 1.8.1+galaxy9: Fixes version label to get versions sorted properly on Galaxy (equivalent to 1.8.1+3+galaxy0). In addition, adds ability to make fields unique in AnnData operations,
 adds additional handler on Scrubblet for workflows convenience, enables Scanpy tools to avoid outputing AnnData/matrix files when not required.
 
@@ -69,14 +71,18 @@
 
   <xml name="requirements">
     <requirements>
-      <requirement type="package" version="1.1.6">scanpy-scripts</requirement>
+        <requirement type="package" version="1.9.301">scanpy-scripts</requirement>
       <yield/>
+      <!-- use this format when you want to test against provisional conda artifacts
+        <container type="docker">quay.io/biocontainers/scanpy-scripts:1.9.301  pyhdfd78af_0</container> 
+      -->
     </requirements>
   </xml>
 
   <xml name="citations">
     <citations>
       <yield />
+      <citation type="doi">10.1038/s41592-021-01102-w</citation>
       <citation type="doi">10.1186/s13059-017-1382-0</citation>
       <citation type="bibtex">
 	@misc{githubscanpy-scripts,
@@ -88,7 +94,6 @@
 	url = {https://github.com/ebi-gene-expression-group/scanpy-scripts},
       }</citation>
       <citation type="doi">10.1101/2020.04.08.032698</citation>
-      <citation type="doi">10.1038/s41592-021-01102-w</citation>
     </citations>
   </xml>