diff scanpy-normalise-data.xml @ 4:f7322b68cc90 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 16c0036a5c5194a70ef201c0c3f37ae8a0b74fd2
author ebi-gxa
date Mon, 28 Oct 2019 09:46:16 -0400
parents 378ea34bbf2a
children 9e42d8795385
line wrap: on
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--- a/scanpy-normalise-data.xml	Mon Oct 28 05:22:50 2019 -0400
+++ b/scanpy-normalise-data.xml	Mon Oct 28 09:46:16 2019 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy2">
+<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy3">
   <description>to make all cells having the same total expression</description>
@@ -25,7 +25,7 @@
     <param name="fraction" argument="--fraction" type="float" value="1" min="0" max="1"
            label="Exclude top expressed genes until the remaining account for no greater than specified fraction of total counts"
            help="Only non-excluded genes will sum up the target number."/>
-    <param name="log_transform" argument="--no-log-transform" type="boolean" truevalue="" falsevalue="--no-log-tranform" checked="True" 
+    <param name="log_transform" argument="--no-log-transform" type="boolean" truevalue="" falsevalue="--no-log-transform" checked="True" 
            label="Apply log transform?" help="If enabled, will apply a log transformation following normalisation."/>
     <param name="save_raw" argument="--save-raw" type="boolean" truevalue="yes" falsevalue="no" checked="true"
            label="Save normalised data in `.raw`" help="The saved normalised data are log1p transformed."/>