Mercurial > repos > ebi-gxa > scanpy_normalise_data

diff scanpy-normalise-data.xml @ 27:3027cb62adbd draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:20 +0000
parents 4bbb2179521c
children
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--- a/scanpy-normalise-data.xml	Fri Oct 13 14:08:26 2023 +0000
+++ b/scanpy-normalise-data.xml	Tue Feb 27 16:42:20 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
+<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>to make all cells having the same total expression</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -75,7 +75,11 @@
       <param name="output_format" value="anndata"/>
       <param name="scale_factor" value="1e4"/>
       <param name="save_raw" value="false"/>
-      <output name="output_h5" file="normalise_data.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="var/n_cells_by_counts"/>
+        </assert_contents>
+      </output>
     </test>
   </tests>