Mercurial > repos > ebi-gxa > scanpy_normalise_data
changeset 4:f7322b68cc90 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 16c0036a5c5194a70ef201c0c3f37ae8a0b74fd2
| author | ebi-gxa |
|---|---|
| date | Mon, 28 Oct 2019 09:46:16 -0400 |
| parents | 378ea34bbf2a |
| children | 1442daff0c7c |
| files | scanpy-normalise-data.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/scanpy-normalise-data.xml Mon Oct 28 05:22:50 2019 -0400 +++ b/scanpy-normalise-data.xml Mon Oct 28 09:46:16 2019 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy2"> +<tool id="scanpy_normalise_data" name="Scanpy NormaliseData" version="@TOOL_VERSION@+galaxy3"> <description>to make all cells having the same total expression</description> <macros> <import>scanpy_macros2.xml</import> @@ -25,7 +25,7 @@ <param name="fraction" argument="--fraction" type="float" value="1" min="0" max="1" label="Exclude top expressed genes until the remaining account for no greater than specified fraction of total counts" help="Only non-excluded genes will sum up the target number."/> - <param name="log_transform" argument="--no-log-transform" type="boolean" truevalue="" falsevalue="--no-log-tranform" checked="True" + <param name="log_transform" argument="--no-log-transform" type="boolean" truevalue="" falsevalue="--no-log-transform" checked="True" label="Apply log transform?" help="If enabled, will apply a log transformation following normalisation."/> <param name="save_raw" argument="--save-raw" type="boolean" truevalue="yes" falsevalue="no" checked="true" label="Save normalised data in `.raw`" help="The saved normalised data are log1p transformed."/>