comparison scanpy-parameter-iterator.xml @ 16:ae4debc68f4a draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 1fc1a5ce4636be4672c65e1765012af3b71d2d13-dirty"

15:fb354a78d4ae

<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy2">
    <description>produce an iteration over a defined parameter</description>
    <macros>
      <import>scanpy_macros.xml</import>
    </macros>
    <requirements>

	     done
    #end if   
	    ]]></command>

    <inputs>
      <param type="select" name="parameter_name" label="Parameter name" help="Select a type of parameter">
        <option value="perplexity" selected="True">Perplexity</option>
        <option value="resolution">Resolution</option>
        <option value="n_neighbors">Number of neighbors</option>
      </param> 
      <conditional name="input_type">    
        <param type="select" name="parameter_values" label="Choose the format of the input values" help="step increase values or list of all the parameter values">
          <option value="list_comma_separated_values" selected="True">List of all parameter values to be iterated</option>
          <option value="step_increase_values">Step increase values to be iterated</option>
        </param>

16:ae4debc68f4a

<tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy3">
    <description>produce an iteration over a defined parameter</description>
    <macros>
      <import>scanpy_macros.xml</import>
    </macros>
    <requirements>

	     done
    #end if   
	    ]]></command>

    <inputs>
      <param type="text" name="parameter_name" value='perplexity' label="Parameter type" help="This is a value that will be prefixed to output file names" />
      <conditional name="input_type">    
        <param type="select" name="parameter_values" label="Choose the format of the input values" help="step increase values or list of all the parameter values">
          <option value="list_comma_separated_values" selected="True">List of all parameter values to be iterated</option>
          <option value="step_increase_values">Step increase values to be iterated</option>
        </param>