Mercurial > repos > ebi-gxa > scanpy_parameter_iterator
comparison scanpy-parameter-iterator.xml @ 28:73d43034c860 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
| author | ebi-gxa |
|---|---|
| date | Tue, 27 Feb 2024 16:43:32 +0000 |
| parents | a8c73996ac50 |
| children |
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| 27:99301e5feddc | 28:73d43034c860 |
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| 1 <tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy9"> | 1 <tool id="scanpy_parameter_iterator" name="Scanpy ParameterIterator" version="0.0.1+galaxy9"> |
| 2 <description>produce an iteration over a defined parameter</description> | 2 <description>produce an iteration over a defined parameter</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>scanpy_macros.xml</import> | 4 <import>scanpy_macros2.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="1.42.1">bioconductor-rtracklayer</requirement> | 7 <requirement type="package" version="1.42.1">bioconductor-rtracklayer</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 49 <conditional name="input_type"> | 49 <conditional name="input_type"> |
| 50 <param name="parameter_values" value="list_comma_separated_values"/> | 50 <param name="parameter_values" value="list_comma_separated_values"/> |
| 51 <param name="input_values" value="1, 5, 10"/> | 51 <param name="input_values" value="1, 5, 10"/> |
| 52 </conditional> | 52 </conditional> |
| 53 <output_collection name="parameter_iteration" count="3"> | 53 <output_collection name="parameter_iteration" count="3"> |
| 54 <element name="perplexity_1" file="perplexity_1.txt" ftype="txt" compare="sim_size"/> | 54 <element name="perplexity_1" file="perplexity_1.txt" ftype="txt" compare="sim_size" delta_frac="0.1"/> |
| 55 <element name="perplexity_5" file="perplexity_5.txt" ftype="txt" compare="sim_size"/> | 55 <element name="perplexity_5" file="perplexity_5.txt" ftype="txt" compare="sim_size" delta_frac="0.1"/> |
| 56 <element name="perplexity_10" file="perplexity_10.txt" ftype="txt" compare="sim_size"/> | 56 <element name="perplexity_10" file="perplexity_10.txt" ftype="txt" compare="sim_size" delta_frac="0.1"/> |
| 57 </output_collection> | 57 </output_collection> |
| 58 </test> | 58 </test> |
| 59 </tests> | 59 </tests> |
| 60 | 60 |
| 61 <help><![CDATA[ | 61 <help><![CDATA[ |