comparison scanpy-plot-embedding.xml @ 26:7d5c97823f8b draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

25:bfb4d298d75f

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_plot_embed" name="Scanpy PlotEmbed" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>visualise cell embeddings</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_obj_file" value="find_cluster.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="basis" value="X_pca"/>
      <param name="color_by" value="louvain"/>
      <param name="use_raw" value="false"/>
      <output name="output_png" file="plot_embed.png" ftype="png" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
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26:7d5c97823f8b

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_plot_embed" name="Scanpy PlotEmbed" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>visualise cell embeddings</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_obj_file" value="find_cluster.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="basis" value="X_pca"/>
      <param name="color_by" value="louvain"/>
      <param name="use_raw" value="false"/>
      <output name="output_png" file="plot_embed.png" ftype="png" compare="sim_size" delta_frac="0.1"/>
    </test>
  </tests>

  <help><![CDATA[
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