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comparison scanpy-multiplet-scrublet-plot.xml @ 7:6f5509cf3176 draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:11 +0000
parents 4276a6dea8d1
children
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6:4276a6dea8d1 7:6f5509cf3176
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_plot_scrublet" name="Scanpy Plot Scrublet" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_plot_scrublet" name="Scanpy Plot Scrublet" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>visualise multiplet scoring distribution</description> 3 <description>visualise multiplet scoring distribution</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
52 <test> 52 <test>
53 <param name="input_obj_file" value="scrublet.h5"/> 53 <param name="input_obj_file" value="scrublet.h5"/>
54 <param name="input_format" value="anndata"/> 54 <param name="input_format" value="anndata"/>
55 <param name="scale_hist_obs" value="linear"/> 55 <param name="scale_hist_obs" value="linear"/>
56 <param name="scale_hist_sim" value="linear"/> 56 <param name="scale_hist_sim" value="linear"/>
57 <output name="output_png" file="plot_scrublet.png" ftype="png" compare="sim_size"/> 57 <output name="output_png" file="plot_scrublet.png" ftype="png" compare="sim_size" delta_frac="0.1"/>
58 </test> 58 </test>
59 </tests> 59 </tests>
60 60
61 <help><![CDATA[ 61 <help><![CDATA[
62 Plot histogram of doublet scores for observed transcriptomes and simulated doublets. 62 Plot histogram of doublet scores for observed transcriptomes and simulated doublets.