comparison scanpy-plot-trajectory.xml @ 26:cb1992d1804b draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

25:9d746af31fe8

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>visualise cell trajectories</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

  <tests>
    <test>
      <param name="input_obj_file" value="paga.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <output name="output_h5" file="plotted_paga.h5" ftype="h5" compare="sim_size"/>
      <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
===============================================================

26:cb1992d1804b

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>visualise cell trajectories</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

  <tests>
    <test>
      <param name="input_obj_file" value="paga.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <output name="output_h5" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="uns/louvain_colors"/>
        </assert_contents>
      </output>
      <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size" delta_frac="0.1"/>
    </test>
  </tests>

  <help><![CDATA[
===============================================================