Mercurial > repos > ebi-gxa > scanpy_plot_trajectory
changeset 11:c646bd10dcab draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author | ebi-gxa |
---|---|
date | Mon, 07 Sep 2020 13:13:22 +0000 |
parents | c99f397434a3 |
children | 746a0de8b12b |
files | scanpy-plot-trajectory.xml scanpy_macros2.xml |
diffstat | 2 files changed, 9 insertions(+), 6 deletions(-) [+] |
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--- a/scanpy-plot-trajectory.xml Fri Jun 05 09:06:18 2020 -0400 +++ b/scanpy-plot-trajectory.xml Mon Sep 07 13:13:22 2020 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> +<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>visualise cell trajectories</description> <macros> <import>scanpy_macros2.xml</import> @@ -46,8 +46,8 @@ <param name="use_key" argument="--use-key" type="text" value="paga" label="The key in `.uns` that contains trajectory information"/> <param name="layout" argument="--layout" type="select" label="Layout functions"> - <option value="fa" selected="true">ForceAtlas2</option> - <option value="fr">Fruchterman-Reingold</option> + <option value="fa">ForceAtlas2</option> + <option value="fr" selected="true">Fruchterman-Reingold</option> <option value="rt">Reingold-Tilford</option> </param> <param name="basis" argument="--basis" type="text" optional="true" label="Name of the embedding to plot" @@ -85,7 +85,7 @@ <tests> <test> - <param name="input_obj_file" value="find_cluster.h5"/> + <param name="input_obj_file" value="paga.h5"/> <param name="input_format" value="anndata"/> <param name="type" value="paga_compare"/> <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size"/>
--- a/scanpy_macros2.xml Fri Jun 05 09:06:18 2020 -0400 +++ b/scanpy_macros2.xml Mon Sep 07 13:13:22 2020 +0000 @@ -1,10 +1,13 @@ <macros> - <token name="@TOOL_VERSION@">1.4.3</token> + <token name="@TOOL_VERSION@">1.6.0</token> <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token> <token name="@PROFILE@">18.01</token> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +1.6.0+galaxy0: Update to scanpy-scripts 0.2.13 (running scanpy ==1.6.0) to incorporate new options, code simplifications, and batch integration methods. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at +EMBL-EBI https://www.ebi.ac.uk/ + 1.4.3+galaxy10: Update to scanpy-scripts 0.2.10 (running scanpy ==1.4.3) to address bugfixes in run-pca. 1.4.3+galaxy10: Update to scanpy-scripts 0.2.9 (running scanpy ==1.4.3) to address bugfixes in find-variable-genes. @@ -46,7 +49,7 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.10">scanpy-scripts</requirement> + <requirement type="package" version="0.3.0">scanpy-scripts</requirement> <yield/> </requirements> </xml>