Mercurial > repos > ebi-gxa > scanpy_read_10x

diff scanpy-read-10x.xml @ 12:5ff50f4a26cd draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author ebi-gxa
date Mon, 07 Sep 2020 14:02:50 +0000
parents 3ffd959f55f4
children 9afcfcd1d215
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--- a/scanpy-read-10x.xml	Fri Jun 05 09:13:51 2020 -0400
+++ b/scanpy-read-10x.xml	Mon Sep 07 14:02:50 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@">
+<tool id="scanpy_read_10x" name="Scanpy Read10x" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>into hdf5 object handled by scanpy</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -47,7 +47,7 @@
       <param name="barcodes" value="barcodes.tsv"/>
       <!-- <param name="cell_meta" value=""/> -->
       <param name="output_format" value="anndata"/>
-      <output name="output_h5" file="output.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5ad" file="read_10x.h5" ftype="h5" compare="sim_size"/>
     </test>
   </tests>