comparison scanpy-regress-variable.xml @ 27:0bab2ae44e7a draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

26:bd65279c7ddc

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>variables that might introduce batch effect</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <test>
      <param name="input_obj_file" value="find_variable_genes.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="variable_keys" value="n_counts"/>
      <output name="output_h5" file="regress.h5" ftype="h5" compare="sim_size"/>
    </test>
  </tests>

  <help><![CDATA[
    .. class:: infomark

27:0bab2ae44e7a

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>variables that might introduce batch effect</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <test>
      <param name="input_obj_file" value="find_variable_genes.h5"/>
      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="variable_keys" value="n_counts"/>
      <output name="output_h5" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="obs/n_genes_by_counts"/>
        </assert_contents>
      </output>
    </test>
  </tests>

  <help><![CDATA[
    .. class:: infomark