Mercurial > repos > ebi-gxa > scanpy_regress_variable
comparison scanpy-regress-variable.xml @ 12:e277d77dc6da draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 62f47287c7e8449c59a1f1f454852ddc669b1b1e-dirty"
author | ebi-gxa |
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date | Mon, 07 Sep 2020 13:04:51 +0000 |
parents | 99c7380fae41 |
children | 8205e95227e4 |
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11:9e92447122a6 | 12:e277d77dc6da |
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1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> | 2 <tool id="scanpy_regress_variable" name="Scanpy RegressOut" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
3 <description>variables that might introduce batch effect</description> | 3 <description>variables that might introduce batch effect</description> |
4 <macros> | 4 <macros> |
5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
36 <test> | 36 <test> |
37 <param name="input_obj_file" value="find_variable_genes.h5"/> | 37 <param name="input_obj_file" value="find_variable_genes.h5"/> |
38 <param name="input_format" value="anndata"/> | 38 <param name="input_format" value="anndata"/> |
39 <param name="output_format" value="anndata"/> | 39 <param name="output_format" value="anndata"/> |
40 <param name="variable_keys" value="n_counts"/> | 40 <param name="variable_keys" value="n_counts"/> |
41 <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/> | 41 <output name="output_h5" file="regress.h5" ftype="h5" compare="sim_size"/> |
42 </test> | 42 </test> |
43 </tests> | 43 </tests> |
44 | 44 |
45 <help><![CDATA[ | 45 <help><![CDATA[ |
46 .. class:: infomark | 46 .. class:: infomark |