comparison scanpy-run-diffmap.xml @ 4:47603f46d6d9 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

3:8e45c89adab2

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy0">
  <description>calculate diffusion components</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="key_added" argument="--key-added" type="text" optional="true"
           label="Additional suffix to the name of the slot to save the calculated trajectory"/>
  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: diffmap object"/>
    <data name="output_embed" format="tsv" from_work_dir="embed.tsv" label="${tool.name} on ${on_string}: diffmap embedding">
      <filter>export_embed</filter>
    </data>
  </outputs>

4:47603f46d6d9

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy6">
  <description>calculate diffusion components</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="key_added" argument="--key-added" type="text" optional="true"
           label="Additional suffix to the name of the slot to save the calculated trajectory"/>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="Diffussion Map"/>
    <data name="output_embed" format="tsv" from_work_dir="embed.tsv" label="${tool.name} on ${on_string}: diffmap embedding">
      <filter>export_embed</filter>
    </data>
  </outputs>