Mercurial > repos > ebi-gxa > scanpy_run_diffmap
comparison scanpy-run-diffmap.xml @ 10:713e94af9d6c draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c98a1caf2a3eed8b1571dae2bf7a794adecdf406"
| author | ebi-gxa |
|---|---|
| date | Wed, 08 Apr 2020 05:22:59 -0400 |
| parents | c869331377bf |
| children | 26e1a99e3c0f |
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| 9:1709957891e5 | 10:713e94af9d6c |
|---|---|
| 1 <?xml version="1.0" encoding="utf-8"?> | 1 <?xml version="1.0" encoding="utf-8"?> |
| 2 <tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@"> | 2 <tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy11" profile="@PROFILE@"> |
| 3 <description>calculate diffusion components</description> | 3 <description>calculate diffusion components</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>scanpy_macros2.xml</import> | 5 <import>scanpy_macros2.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 30 truevalue="--export-embedding embed.tsv" falsevalue="" | 30 truevalue="--export-embedding embed.tsv" falsevalue="" |
| 31 label="Export embeddings as a tab-separated text table"/> | 31 label="Export embeddings as a tab-separated text table"/> |
| 32 <param name="use_graph" argument="--use-graph" value="neighbors" type="text" | 32 <param name="use_graph" argument="--use-graph" value="neighbors" type="text" |
| 33 label="Name of the slot that holds the KNN graph"/> | 33 label="Name of the slot that holds the KNN graph"/> |
| 34 <param name="key_added" argument="--key-added" type="text" optional="true" | 34 <param name="key_added" argument="--key-added" type="text" optional="true" |
| 35 label="Additional suffix to the name of the slot to save the calculated trajectory"/> | 35 label="Additional suffix to the name of the slot to save the calculated diffusion map"/> |
| 36 </inputs> | 36 </inputs> |
| 37 | 37 |
| 38 <outputs> | 38 <outputs> |
| 39 <expand macro="output_data_obj" description="Diffussion Map"/> | 39 <expand macro="output_data_obj" description="Diffussion Map"/> |
| 40 <data name="output_embed" format="tsv" from_work_dir="embed.tsv" label="${tool.name} on ${on_string}: diffmap embedding"> | 40 <data name="output_embed" format="tsv" from_work_dir="embed.tsv" label="${tool.name} on ${on_string}: diffmap embedding"> |