comparison scanpy-run-dpt.xml @ 10:0e264c40fd06 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit c98a1caf2a3eed8b1571dae2bf7a794adecdf406"

9:8a6860957c84

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy10" profile="@PROFILE@">
  <description>diffusion pseudotime inference</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="root_value" argument="--root attr {value}" type="text"
           label="Name of the clustering that defines the root cell type"/>
    <param name="use_graph" argument="--use-graph" value="neighbors" type="text"
           label="Name of the slot that holds the KNN graph"/>
    <param name="key_added" argument="--key-added" type="text" optional="true"
           label="Additional suffix to the name of the slot to save the calculated trajectory"/>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="Diffussion pseudotime inference"/>
  </outputs>

10:0e264c40fd06

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_dpt" name="Scanpy DPT" version="@TOOL_VERSION@+galaxy11" profile="@PROFILE@">
  <description>diffusion pseudotime inference</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="root_value" argument="--root attr {value}" type="text"
           label="Name of the clustering that defines the root cell type"/>
    <param name="use_graph" argument="--use-graph" value="neighbors" type="text"
           label="Name of the slot that holds the KNN graph"/>
    <param name="key_added" argument="--key-added" type="text" optional="true"
           label="Additional suffix to the name of the slot to save the calculated pseudo-time"/>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="Diffussion pseudotime inference"/>
  </outputs>