comparison scanpy-run-fdg.xml @ 26:be019b069e31 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty

25:cef0ddd01875

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
  <description>visualise cell clusters using force-directed graph</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="default" value="false"/>
      <param name="embeddings" value="true"/>
      <param name="random_seed" value="0"/>
      <output name="output_h5" file="run_fdg.h5" ftype="h5" compare="sim_size"/>
      <output name="output_embed" file="run_fdg.embeddings.tsv" ftype="tabular" compare="sim_size">
        <assert_contents>
          <has_n_columns n="3"/>
        </assert_contents>
      </output>
    </test>

26:be019b069e31

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
  <description>visualise cell clusters using force-directed graph</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

      <param name="input_format" value="anndata"/>
      <param name="output_format" value="anndata"/>
      <param name="default" value="false"/>
      <param name="embeddings" value="true"/>
      <param name="random_seed" value="0"/>
      <output name="output_h5" ftype="h5">
        <assert_contents>
          <has_h5_keys keys="obsm/X_draw_graph_fr"/>
        </assert_contents>
      </output>
      <output name="output_embed" file="run_fdg.embeddings.tsv" ftype="tabular" compare="sim_size" delta_frac="0.1">
        <assert_contents>
          <has_n_columns n="3"/>
        </assert_contents>
      </output>
    </test>