Mercurial > repos > ebi-gxa > scanpy_run_fdg
changeset 16:a6190ae4fe16 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 045c1232e9d8cdc7bc084e089900e9bd17fc47e1-dirty"
| author | ebi-gxa |
|---|---|
| date | Tue, 23 Mar 2021 16:32:40 +0000 |
| parents | 5d2c8acd2ae4 |
| children | 14866357fbec |
| files | scanpy-run-fdg.xml |
| diffstat | 1 files changed, 2 insertions(+), 4 deletions(-) [+] |
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--- a/scanpy-run-fdg.xml Wed Nov 25 16:21:23 2020 +0000 +++ b/scanpy-run-fdg.xml Tue Mar 23 16:32:40 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>visualise cell clusters using force-directed graph</description> <macros> <import>scanpy_macros2.xml</import> @@ -47,9 +47,7 @@ <param name="neighbors_key" argument="--neighbors-key" value="neighbors" type="text" label="Name of the slot that holds the KNN graph"/> <param name="obsp" type="boolean" checked="false" label="Use .obsp[obsp] as adjacency" help="You can’t specify both obsp and neighbors-key at the same time."/> - <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods"> - <option value="paga">paga</option> - </param> + <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods"/> <param name="layout" argument="--layout" type="select" label="Graph layout"> <option value="fa">fa</option> <option value="fr" selected="true">fr</option>