Mercurial > repos > ebi-gxa > scanpy_run_paga

comparison scanpy_macros2.xml @ 16:0488639e0e8a draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 858a2398f1dbbd60110867c593c237358c794615-dirty"
author ebi-gxa
date Mon, 12 Apr 2021 14:46:34 +0000
parents 211fe30d83be
children f49758aa29e5
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15:211fe30d83be 16:0488639e0e8a
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.6.0</token> 2 <token name="@TOOL_VERSION@">1.7.2</token>
3 <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token> 3 <token name="@HELP@">More information can be found at https://scanpy.readthedocs.io</token>
4 <token name="@PROFILE@">18.01</token> 4 <token name="@PROFILE@">18.01</token>
5 <token name="@VERSION_HISTORY@"><![CDATA[ 5 <token name="@VERSION_HISTORY@"><![CDATA[
6 **Version history** 6 **Version history**
7
8 1.7.2+galaxy0: Upate to scanpy-scripts 0.3.3 (running scanpy ==1.7.2) to incorporate fix for object output from PAGA plotting, to allow PAGA init of FDG.
7 9
8 1.6.0+galaxy0: Update to scanpy-scripts 0.2.13 (running scanpy ==1.6.0) to incorporate new options, code simplifications, and batch integration methods. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at 10 1.6.0+galaxy0: Update to scanpy-scripts 0.2.13 (running scanpy ==1.6.0) to incorporate new options, code simplifications, and batch integration methods. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at
9 EMBL-EBI https://www.ebi.ac.uk/ 11 EMBL-EBI https://www.ebi.ac.uk/
10 12
11 1.4.3+galaxy10: Update to scanpy-scripts 0.2.10 (running scanpy ==1.4.3) to address bugfixes in run-pca. 13 1.4.3+galaxy10: Update to scanpy-scripts 0.2.10 (running scanpy ==1.4.3) to address bugfixes in run-pca.
47 </token> 49 </token>
48 <token name="@EXPORT_MTX_OPTS@">${export_mtx}</token> 50 <token name="@EXPORT_MTX_OPTS@">${export_mtx}</token>
49 51
50 <xml name="requirements"> 52 <xml name="requirements">
51 <requirements> 53 <requirements>
52 <requirement type="package" version="0.3.2">scanpy-scripts</requirement> 54 <requirement type="package" version="0.3.3">scanpy-scripts</requirement>
53 <yield/> 55 <yield/>
54 </requirements> 56 </requirements>
55 </xml> 57 </xml>
56 58
57 <xml name="citations"> 59 <xml name="citations">
66 publisher = {GitHub}, 68 publisher = {GitHub},
67 journal = {GitHub repository}, 69 journal = {GitHub repository},
68 url = {https://github.com/ebi-gene-expression-group/scanpy-scripts}, 70 url = {https://github.com/ebi-gene-expression-group/scanpy-scripts},
69 }</citation> 71 }</citation>
70 <citation type="doi">10.1101/2020.04.08.032698</citation> 72 <citation type="doi">10.1101/2020.04.08.032698</citation>
73 <citation type="doi">10.1038/s41592-021-01102-w</citation>
71 </citations> 74 </citations>
72 </xml> 75 </xml>
73 76
74 <xml name="input_object_params"> 77 <xml name="input_object_params">
75 <param name="input_obj_file" argument="input-object-file" type="data" format="h5,h5ad" label="Input object in AnnData/Loom format"/> 78 <param name="input_obj_file" argument="input-object-file" type="data" format="h5,h5ad" label="Input object in AnnData/Loom format"/>