comparison scanpy-run-paga.xml @ 4:09c82810d14a draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

3:fa114efdb1e7

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy0">
  <description>trajectory inference</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="use_graph" argument="--use-graph" value="neighbors" type="text" label="Name of the slot that holds the KNN graph"/>
    <param name="key_added" argument="--key-added" type="text" optional="true" label="Additional suffix to the name of the slot to save the calculated trajectory"/>
  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: PAGA object"/>
  </outputs>

  <tests>
    <test>
      <param name="input_obj_file" value="compute_graph.h5"/>

4:09c82810d14a

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_paga" name="Scanpy PAGA" version="@TOOL_VERSION@+galaxy6">
  <description>trajectory inference</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    <param name="use_graph" argument="--use-graph" value="neighbors" type="text" label="Name of the slot that holds the KNN graph"/>
    <param name="key_added" argument="--key-added" type="text" optional="true" label="Additional suffix to the name of the slot to save the calculated trajectory"/>
  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="PAGA object"/>
  </outputs>

  <tests>
    <test>
      <param name="input_obj_file" value="compute_graph.h5"/>