comparison scanpy-run-pca.xml @ 5:242cf7e1fd0c draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003

4:c990e40fbd46

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0">
  <description>for dimensionality reduction</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    </param>

  </inputs>

  <outputs>
    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: PCA object"/>
    <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings">
      <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter>
    </data>
  </outputs>

5:242cf7e1fd0c

<?xml version="1.0" encoding="utf-8"?>
<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy6">
  <description>for dimensionality reduction</description>
  <macros>
    <import>scanpy_macros2.xml</import>
  </macros>
  <expand macro="requirements"/>

    </param>

  </inputs>

  <outputs>
    <expand macro="output_data_obj" description="PCA object"/>
    <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings">
      <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter>
    </data>
  </outputs>