Mercurial > repos > ebi-gxa > scanpy_run_pca

diff scanpy-run-pca.xml @ 5:242cf7e1fd0c draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:36:39 -0500
parents 7798c318e7d7
children c9fb2c0598cd
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--- a/scanpy-run-pca.xml	Wed Nov 20 05:11:38 2019 -0500
+++ b/scanpy-run-pca.xml	Mon Nov 25 14:36:39 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0">
+<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy6">
   <description>for dimensionality reduction</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -55,7 +55,7 @@
   </inputs>
 
   <outputs>
-    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: PCA object"/>
+    <expand macro="output_data_obj" description="PCA object"/>
     <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings">
       <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter>
     </data>