Mercurial > repos > ebi-gxa > scanpy_run_umap
comparison scanpy_macros2.xml @ 23:0da35cd42e7c draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 9748fb7ca203206ecac97461f60ce75890d00fa4-dirty"
| author | ebi-gxa |
|---|---|
| date | Fri, 15 Oct 2021 15:09:25 +0000 |
| parents | ad70b3552c99 |
| children | 0f98603d0116 |
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| 22:ad70b3552c99 | 23:0da35cd42e7c |
|---|---|
| 39 <token name="@SAVE_MATRIX_OPTS@"> | 39 <token name="@SAVE_MATRIX_OPTS@"> |
| 40 #if $save_raw | 40 #if $save_raw |
| 41 --save-raw | 41 --save-raw |
| 42 #end if | 42 #end if |
| 43 #if $save_layer | 43 #if $save_layer |
| 44 --save-layer ${settings.save_layer} | 44 --save-layer ${save_layer} |
| 45 #end if | 45 #end if |
| 46 </token> | 46 </token> |
| 47 <token name="@OUTPUT_OPTS@"> | 47 <token name="@OUTPUT_OPTS@"> |
| 48 #if str($output_format).startswith('anndata') | 48 #if str($output_format).startswith('anndata') |
| 49 --show-obj stdout --output-format anndata output.h5 | 49 --show-obj stdout --output-format anndata output.h5 |