Mercurial > repos > ebi-gxa > scanpy_scale_data
comparison scanpy-scale-data.xml @ 18:22f2957da902 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ebe77c8718ec65277f4dc0d71fa5f4c5677df62d-dirty"
| author | ebi-gxa |
|---|---|
| date | Wed, 05 May 2021 12:15:30 +0000 |
| parents | 83db723bc0e1 |
| children | f86b2c3bc459 |
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| 17:796cd21bb304 | 18:22f2957da902 |
|---|---|
| 10 PYTHONIOENCODING=utf-8 scanpy-scale-data | 10 PYTHONIOENCODING=utf-8 scanpy-scale-data |
| 11 #if $scale_max | 11 #if $scale_max |
| 12 --max-value '${scale_max}' | 12 --max-value '${scale_max}' |
| 13 #end if | 13 #end if |
| 14 ${zero_center} | 14 ${zero_center} |
| 15 @SAVE_MATRIX_OPTS@ | |
| 15 @INPUT_OPTS@ | 16 @INPUT_OPTS@ |
| 16 @OUTPUT_OPTS@ | 17 @OUTPUT_OPTS@ |
| 17 ]]></command> | 18 ]]></command> |
| 18 | 19 |
| 19 <inputs> | 20 <inputs> |
| 20 <expand macro="input_object_params"/> | 21 <expand macro="input_object_params"/> |
| 21 <expand macro="output_object_params"/> | 22 <expand macro="output_object_params"/> |
| 22 <param name="zero_center" type="boolean" checked="true" truevalue="" falsevalue="--no-zero-center" | 23 <param name="zero_center" type="boolean" checked="true" truevalue="" falsevalue="--no-zero-center" |
| 23 label="Zero center data before scaling"/> | 24 label="Zero center data before scaling"/> |
| 24 <param name="scale_max" argument="--max-value" type="float" min="0" optional="true" label="Truncate to this value after scaling"/> | 25 <param name="scale_max" argument="--max-value" type="float" min="0" optional="true" label="Truncate to this value after scaling"/> |
| 26 <expand macro="save_matrix_params"/> | |
| 25 </inputs> | 27 </inputs> |
| 26 | 28 |
| 27 <outputs> | 29 <outputs> |
| 28 <expand macro="output_data_obj" description="Scaled data"/> | 30 <expand macro="output_data_obj" description="Scaled data"/> |
| 29 </outputs> | 31 </outputs> |