Mercurial > repos > ebi-gxa > scanpy_scale_data
diff scanpy-scale-data.xml @ 26:4cc9362782b4 draft default tip
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author | ebi-gxa |
---|---|
date | Tue, 27 Feb 2024 16:43:09 +0000 |
parents | bf30bd6355da |
children |
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--- a/scanpy-scale-data.xml Fri Oct 13 14:09:07 2023 +0000 +++ b/scanpy-scale-data.xml Tue Feb 27 16:43:09 2024 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> +<tool id="scanpy_scale_data" name="Scanpy ScaleData" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> <description>to make expression variance the same for all genes</description> <macros> <import>scanpy_macros2.xml</import> @@ -37,7 +37,11 @@ <param name="output_format" value="anndata"/> <param name="zero_center" value="true"/> <param name="scale_max" value="10"/> - <output name="output_h5" file="scale_data.h5" ftype="h5" compare="sim_size"/> + <output name="output_h5" ftype="h5"> + <assert_contents> + <has_h5_keys keys="var/mean"/> + </assert_contents> + </output> </test> </tests>