comparison scater_macros.xml @ 0:add247843ef0 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 9bf9a6e46a330890be932f60d1d996dd166426c4
author ebi-gxa
date Wed, 03 Apr 2019 11:42:39 -0400
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-1:000000000000 0:add247843ef0
1 <macros>
2 <token name="@TOOL_VERSION@">1.8.4</token>
3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scater.html</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="0.0.4">bioconductor-scater-scripts</requirement>
7 <yield/>
8 </requirements>
9 </xml>
10 <xml name="version">
11 <version_command><![CDATA[
12 echo $(R --version | grep version | grep -v GNU)", scater version" $(R --vanilla --slave -e "library(scater); cat(sessionInfo()\$otherPkgs\$scater\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
13 ]]></version_command>
14 </xml>
15 <token name="@VERSION_HISTORY@"><![CDATA[
16 **Version history**
17
18 1.8.4+galaxy0: Initial contribution. Suhaib Mohammed, Ni Huang and Pablo Moreno, Expression Atlas team https://www.ebi.ac.uk/gxa/home at
19 EMBL-EBI https://www.ebi.ac.uk/ and and Teichmann Lab at Wellcome Sanger Institute.
20 ]]></token>
21 <xml name="citations">
22 <citations>
23 <citation type="bibtex">
24 @article{doi:10.1093/bioinformatics/btw777,
25 author = {McCarthy, Davis J and Campbell, Kieran R and Lun, Aaron T L and Wills, Quin F},
26 title = {Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R},
27 journal = {Bioinformatics},
28 volume = {33},
29 number = {8},
30 pages = {1179-1186},
31 year = {2017},
32 doi = {10.1093/bioinformatics/btw777},
33 URL = {http://dx.doi.org/10.1093/bioinformatics/btw777},
34 eprint = {/oup/backfile/content_public/journal/bioinformatics/33/8/10.1093_bioinformatics_btw777/2/btw777.pdf}
35 }
36 </citation>
37 <citation type="bibtex">
38 @misc{githubbioconductor-scater-scripts.git,
39 author = {Jonathan Manning, Ni Huang, Suhaib Mohammed, EBI Gene Expression Team},
40 year = {2018},
41 title = {Scater-scripts: command line interface for Scater},
42 publisher = {GitHub},
43 journal = {GitHub repository},
44 url = {https://github.com/ebi-gene-expression-group/bioconductor-scater-scripts.git},
45 }
46 </citation>
47 <yield />
48 </citations>
49 </xml>
50 </macros>