diff sccaf_regress_out.xml @ 1:5ef0610e9f50 draft default tip

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/sccaf commit 7034937deaaf56b2e6f585bb28234a86a5b5fa2e

--- a/sccaf_regress_out.xml	Tue Nov 19 13:06:04 2019 -0500
+++ b/sccaf_regress_out.xml	Mon Nov 25 06:28:23 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="sccaf_regress_out" name="SCCAF mulitple regress out" version="@TOOL_VERSION@+galaxy0">
+<tool id="sccaf_regress_out" name="SCCAF mulitple regress out" version="@TOOL_VERSION@+galaxy1">
   <description>with multiple categorical keys on an AnnData object.</description>
   <macros>
     <import>sccaf_macros.xml</import>
@@ -11,10 +11,11 @@
   ]]></command>
   <inputs>
     <param name="input_obj_file" argument="input-object-file" type="data" format="h5" label="Input object in hdf5 AnnData format"/>
+    <expand macro="output_object_params"/>
     <param name="keys_to_regress" label="Keys to regress" help="Comma separated keys for regressing out; they need to exist in the observations part of the AnnData object." type="text"/>
   </inputs>
   <outputs>
-    <data name="output" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: regressesed out on ${keys_to_regress}"/>
+    <expand macro="output_data_obj" description="regressed out on ${keys_to_regress}"/>
   </outputs>
 
   <tests>
@@ -22,7 +23,7 @@
       <param name="input_obj_file" value="find_cluster.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="color_by" value="louvain"/>
-      <output name="output" file="output.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5ad" file="output.h5" ftype="h5" compare="sim_size"/>
     </test>
   </tests>