Mercurial > repos > ebi-gxa > scmap_get_std_output
diff scmap_macros.xml @ 0:5f95950c3959 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 542b6e6848acedbbedb6fa2d4b44c8d476597cdd"
author | ebi-gxa |
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date | Fri, 03 Apr 2020 06:33:57 -0400 |
parents | |
children | 656c588b718c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/scmap_macros.xml Fri Apr 03 06:33:57 2020 -0400 @@ -0,0 +1,44 @@ +<macros> + <token name="@TOOL_VERSION@">1.6.0</token> + <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token> + <token name="@PROFILE@">18.01</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="0.0.5">scmap-cli</requirement> + <yield/> + </requirements> + </xml> + <xml name="version"> + <version_command><![CDATA[ + echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ") + ]]></version_command> + </xml> + <token name="@VERSION_HISTORY@"><![CDATA[ +**Version history** +1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/. + ]]></token> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @Article{, + title = {scmap - A tool for unsupervised projection of single cell RNA-seq data}, + author = {Vladimir Yu. Kiselev and Martin Hemberg}, + year = {2017}, + journal = {bioRxiv}, + url = {http://doi.org/10.1101/150292}, + } + </citation> + <citation type="bibtex"> + @misc{githubscmap-cli.git, + author = {Jonathan Manning, EBI Gene Expression Team}, + year = {2018}, + title = {scmap-cli: command line interface for scmap}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/ebi-gene-expression-group/scmap-cli.git}, + } + </citation> + <yield /> + </citations> + </xml> +</macros>