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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 9dbf2be568a0cea589fee8a42f070718d7966780-dirty
author ebi-gxa
date Mon, 08 Jul 2024 08:53:24 +0000
parents a74497e18277
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<tool id="scmap_preprocess_sce" name="Scmap pre-process" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
    <description>Pre-process SCE object before running downstream analysis</description>
    <macros>
        <import>scmap_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
        scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${output_single_cell_experiment}"
        ]]></command>
    <inputs>
        <param type="data" name="input_single_cell_experiment" label="Input SCE object" format="rdata" help="SCE object to be pre-processed" />
    </inputs>
    <outputs>
        <data name="output_single_cell_experiment" format="rdata" />
    </outputs>
    <help><![CDATA[
    @HELP@
    
    @VERSION_HISTORY@
    ]]></help>
    <expand macro="citations" />
</tool>