comparison scmap_scmap_cell.xml @ 9:b78cdc83a479 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 53f809e83bf7784787f78f16dc78d7601231dcfa"
author ebi-gxa
date Fri, 15 May 2020 05:33:31 -0400
parents 5c94e80e428f
children bcc0113fa796
comparison
equal deleted inserted replaced
8:5c94e80e428f 9:b78cdc83a479
1 <tool id="scmap_scmap_cell" name="Scmap cell projection" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> 1 <tool id="scmap_scmap_cell" name="Scmap cell projection" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> 2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description>
3 <macros> 3 <macros>
4 <import>scmap_macros.xml</import> 4 <import>scmap_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
35 <outputs> 35 <outputs>
36 <data name="output_single_cell_experiment" format="rdata" /> 36 <data name="output_single_cell_experiment" format="rdata" />
37 <data name="closest_cells_text_file" format="csv" /> 37 <data name="closest_cells_text_file" format="csv" />
38 <data name="closest_cells_similarities_text_file" format="csv" /> 38 <data name="closest_cells_similarities_text_file" format="csv" />
39 <data name="closest_cells_clusters_csv" format="csv"> 39 <data name="closest_cells_clusters_csv" format="csv">
40 <filter>cluster_projection['do_cluster_projection'] == "true"</filter> 40 <filter>cluster_projection['do_cluster_projection']</filter>
41 </data> 41 </data>
42 </outputs> 42 </outputs>
43 <tests> 43 <tests>
44 <test> 44 <test>
45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> 45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/>