Mercurial > repos > ebi-gxa > scmap_scmap_cell
changeset 7:5e6d54e2ab89 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 87e6fbd3764e43b31eaa9baf9df5692eb83c8fdc"
| author | ebi-gxa |
|---|---|
| date | Wed, 06 May 2020 06:31:53 -0400 |
| parents | 35d8f7d62659 |
| children | 5c94e80e428f |
| files | scmap_scmap_cell.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/scmap_scmap_cell.xml Mon May 04 07:14:30 2020 -0400 +++ b/scmap_scmap_cell.xml Wed May 06 06:31:53 2020 -0400 @@ -23,7 +23,7 @@ <param name="n_nearest_neighbours" type="integer" label="Number of nearest neighbours" value='5' help="A positive integer specifying the number of nearest neighbours to find" /> <conditional name="cluster_projection"> - <param name="cluster_projection" type="boolean" checked="false" label="Annotate cells of the projection dataset using labels of the reference?" help="If cell cluster annotation is available for the reference datasets, in addition to finding top 10 nearest neighbours scmap-cell also allows to annotate cells of the projection dataset using labels of the reference."/> + <param name="do_cluster_projection" type="boolean" checked="false" label="Annotate cells of the projection dataset using labels of the reference?" help="If cell cluster annotation is available for the reference datasets, in addition to finding top 10 nearest neighbours scmap-cell also allows to annotate cells of the projection dataset using labels of the reference."/> <when value="true" > <param name="cluster_col" type="text" label="Cluster column" value="cell_type1" help="Column name in the 'colData' slot of the SingleCellExperiment object containing the cell classification information." /> </when> @@ -37,7 +37,7 @@ <data name="closest_cells_text_file" format="csv" /> <data name="closest_cells_similarities_text_file" format="csv" /> <data name="closest_cells_clusters_csv" format="csv"> - <filter>cluster_projection == "true"</filter> + <filter>cluster_projection['do_cluster_projection'] == "true"</filter> </data> </outputs> <tests>