comparison scmap_select_features.xml @ 9:91f29745bda6 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 8350493268ce3ced12b1133b9b0f734a288deb75

8:e5aaa5bea06a

    <macros>
        <import>scmap_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
        scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${input_single_cell_experiment}.preprocessed" && scmap-select-features.R --input-object-file "${input_single_cell_experiment}.preprocessed" --n-features '$n_features' --output-object-file '$output_single_cell_experiment' --output-plot-file '$plot'
    ]]></command>
    <inputs>
        <param type="data" name="input_single_cell_experiment" label="SingleCellExperiment object" format="rdata" help="File with serialized SingleCellExperiment object" />
        <param name="n_features" type="integer" label="Number of features" value="500" help="Number of features to be selected" />
    </inputs>

9:91f29745bda6

    <macros>
        <import>scmap_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[
        scmap-preprocess-sce.R 
         --input-object "${input_single_cell_experiment}"
         --output-sce-object "result.preprocessed" && 
        scmap-select-features.R 
         --input-object-file "result.preprocessed"
         --n-features '$n_features'
         --output-object-file '$output_single_cell_experiment'
         --output-plot-file '$plot'
    ]]></command>
    <inputs>
        <param type="data" name="input_single_cell_experiment" label="SingleCellExperiment object" format="rdata" help="File with serialized SingleCellExperiment object" />
        <param name="n_features" type="integer" label="Number of features" value="500" help="Number of features to be selected" />
    </inputs>