Mercurial > repos > ebi-gxa > score_genes_aucell
comparison get_test_data.sh @ 0:1e8697931d73 draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c8c39f14eeee6e7a6d097fd0cb9430b12793eb8b
author | ebi-gxa |
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date | Thu, 09 Nov 2023 11:36:08 +0000 |
parents | |
children | c700f0381e84 |
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-1:000000000000 | 0:1e8697931d73 |
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1 #!/usr/bin/env bash | |
2 | |
3 BASENAME_FILE='mito_counted_anndata.h5ad' | |
4 | |
5 MTX_LINK='https://zenodo.org/record/7053673/files/Mito-counted_AnnData' | |
6 | |
7 # convenience for getting data | |
8 function get_data { | |
9 local link=$1 | |
10 local fname=$2 | |
11 | |
12 if [ ! -f $fname ]; then | |
13 echo "$fname not available locally, downloading.." | |
14 wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link | |
15 fi | |
16 } | |
17 | |
18 # get matrix data | |
19 mkdir -p test-data | |
20 pushd test-data | |
21 get_data $MTX_LINK $BASENAME_FILE |