Mercurial > repos > ebi-gxa > score_genes_aucell

comparison get_test_data.sh @ 2:c700f0381e84 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 1034a450c97dcbb77871050cf0c6d3da90dac823
author ebi-gxa
date Fri, 15 Mar 2024 12:18:05 +0000
parents 1e8697931d73
children
comparison
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1:e024d8280886 2:c700f0381e84
17 17
18 # get matrix data 18 # get matrix data
19 mkdir -p test-data 19 mkdir -p test-data
20 pushd test-data 20 pushd test-data
21 get_data $MTX_LINK $BASENAME_FILE 21 get_data $MTX_LINK $BASENAME_FILE
22
23
24 # Download input anndata for decoupler-pathway_inference
25 BASENAME_FILE='pbmc3k_processed.h5ad'
26
27 MTX_LINK='https://zenodo.org/records/3752813/files/pbmc3k_processed.h5ad'
28
29 get_data $MTX_LINK $BASENAME_FILE
30
31 # Download output anndata for decoupler-pathway_inference
32 BASENAME_FILE='test.h5ad'
33
34 MTX_LINK='https://zenodo.org/records/10401958/files/test.h5ad'
35
36 get_data $MTX_LINK $BASENAME_FILE
37