diff get_test_data.sh @ 0:1e8697931d73 draft

planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c8c39f14eeee6e7a6d097fd0cb9430b12793eb8b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_test_data.sh	Thu Nov 09 11:36:08 2023 +0000
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+
+BASENAME_FILE='mito_counted_anndata.h5ad'
+
+MTX_LINK='https://zenodo.org/record/7053673/files/Mito-counted_AnnData'
+
+# convenience for getting data
+function get_data {
+  local link=$1
+  local fname=$2
+
+  if [ ! -f $fname ]; then
+    echo "$fname not available locally, downloading.."
+    wget -O $fname --retry-connrefused --waitretry=1 --read-timeout=20 --timeout=15 -t 3 $link
+  fi
+}
+
+# get matrix data
+mkdir -p test-data
+pushd test-data
+get_data $MTX_LINK $BASENAME_FILE