Mercurial > repos > ebi-gxa > scpred_eigen_decompose
changeset 1:3867289e6c1a draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 11:27:12 -0400 |
| parents | c6fd7cbaf247 |
| children | 70e5a19d9d7e |
| files | scpred_eigen_decomp.xml scpred_macros.xml |
| diffstat | 2 files changed, 11 insertions(+), 4 deletions(-) [+] |
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--- a/scpred_eigen_decomp.xml Wed Apr 08 06:25:22 2020 -0400 +++ b/scpred_eigen_decomp.xml Fri Apr 24 11:27:12 2020 -0400 @@ -5,7 +5,15 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_eigen_decomp.R --training-matrix "${training_matrix}" --log-transform "${log_transform}" --training-labels "${training_labels}" --principal-comps "${principal_components}" --output-path "${output_object_path}" ]]></command> + scpred_eigen_decomp.R --training-matrix "${training_matrix}" --training-labels "${training_labels}" --output-path "${output_object_path}" + + #if $log_transform + --log-transform "${log_transform}" + #end if + #if $principal_components + --principal-comps "${principal_components}" + #end if + ]]></command> <inputs> <param type="data" name="training_matrix" label="Training matrix" format="rdata" help="Training matrix obtained from train/test split step" /> <param type="boolean" name="log_transform" label="log-transform" checked="True" help="Should log-transform be performed on training data?" />
--- a/scpred_macros.xml Wed Apr 08 06:25:22 2020 -0400 +++ b/scpred_macros.xml Fri Apr 24 11:27:12 2020 -0400 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml> @@ -37,10 +37,9 @@ journal = {GitHub repository}, url = {https://github.com/ebi-gene-expression-group/scpred-cli.git}, } - </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> <yield /> </citations> </xml> </macros> -