comparison scpred_get_std_output.xml @ 1:a7bf1d2b310b draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"

0:156b1e9cc269

    <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[ 
        scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --output-table "${output_table}" 
        ]]></command>
    <inputs>
        <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" />
        <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" />
    </inputs>
    <outputs>
        <data name="output_table" format="txt" />
    </outputs>

1:a7bf1d2b310b

    <macros>
        <import>scpred_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[ 
        scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" 
        ]]></command>
    <inputs>
        <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" />
        <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" />
        <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" />
    </inputs>
    <outputs>
        <data name="output_table" format="txt" />
    </outputs>