Mercurial > repos > ebi-gxa > scpred_get_std_output
view scpred_get_std_output.xml @ 3:43ce84bd1d9a draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"
author | ebi-gxa |
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date | Fri, 01 May 2020 10:14:28 -0400 |
parents | 138d00a58412 |
children | d276a8dd73c7 |
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<tool id="scpred_get_std_output" name="Scpred - get output in standard format" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>This method allows to export predicted labels in a standardised format, simplifying downstream analyses.</description> <macros> <import>scpred_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" ]]></command> <inputs> <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" /> <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> </inputs> <outputs> <data name="output_table" format="txt" /> </outputs> <tests> <test> <param name="predictions_file" value="predictions_table.txt" /> <param name="get_scores" value="TRUE" /> <output name="output_table" file="scpred_output_tbl.txt" compare="sim_size"/> </test> </tests> <help><![CDATA[ @HELP@ @VERSION_HISTORY@ ]]></help> <expand macro="citations" /> </tool>