Mercurial > repos > ebi-gxa > scpred_predict_labels
changeset 2:051f5801c819 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
| author | ebi-gxa |
|---|---|
| date | Wed, 29 Apr 2020 12:42:24 -0400 |
| parents | f0862eb4f999 |
| children | 1bc003e80986 |
| files | scpred_predict.xml |
| diffstat | 1 files changed, 16 insertions(+), 2 deletions(-) [+] |
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--- a/scpred_predict.xml Fri Apr 24 11:26:54 2020 -0400 +++ b/scpred_predict.xml Wed Apr 29 12:42:24 2020 -0400 @@ -1,11 +1,25 @@ -<tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy0"> +<tool id="scpred_predict_labels" name="Scpred predict" version="@TOOL_VERSION@+galaxy1"> <description>Make cell type predictions using trained model.</description> <macros> <import>scpred_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_predict.R --input-object "${input_object}" --pred-data "${pred_data}" --test-labels "${test_labels}" --cell-types-column "${cell_types_column}" --output-path "${output_tbl_path}" --plot-path "${plot_path}" --confusion-table "${confusion_table}" + scpred_predict.R --input-object "${input_object}" --pred-data "${pred_data}" --output-path "${output_tbl_path}" + + #if $test_labels + --test-labels "${test_labels}" + #end if + #if $cell_types_column + --cell-types-column "${cell_types_column}" + #end if + #if $plot_path + --plot-path "${plot_path}" + #end if + #if $confusion_table + --confusion-table "${confusion_table}" + #end if + ]]></command> <inputs> <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format" />