annotate scpred_macros.xml @ 0:ec6d9a9fb273 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
author ebi-gxa
date Mon, 27 Apr 2020 09:43:08 -0400
parents
children ecfdb9347edb
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
1 <macros>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
2 <token name="@TOOL_VERSION@">1.0.0</token>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
3 <token name="@HELP@">More information can be found at https://joseah.github.io/post/introduction-to-scpred/</token>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
4 <token name="@PROFILE@">18.01</token>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
5 <xml name="requirements">
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
6 <requirements>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
7 <requirement type="package" version="0.0.7">scpred-cli</requirement>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
8 <yield/>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
9 </requirements>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
10 </xml>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
11 <xml name="version">
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
12 <version_command><![CDATA[
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
13 echo $(R --version | grep version | grep -v GNU)", scpred version" $(R --vanilla --slave -e "library(scpred); cat(sessionInfo()\$otherPkgs\$scpred\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
14 ]]></version_command>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
15 </xml>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
16 <token name="@VERSION_HISTORY@"><![CDATA[
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
17 **Version history**
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
18 1.0.0+galaxy0: Initilal contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
19 ]]></token>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
20 <xml name="citations">
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
21 <citations>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
22 <citation type="bibtex">
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
23 @article{Alquicira-Hernandez2019,
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
24 author = {Alquicira-Hernandez, Jose and Sathe, Anuja and Ji, Hanlee P and Nguyen, Quan and Powell, Joseph E},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
25 journal = {Genome Biology},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
26 title = {{scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data}},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
27 url = {https://doi.org/10.1186/s13059-019-1862-5},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
28 year = {2019}
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
29 }
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
30 </citation>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
31 <citation type="bibtex">
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
32 @misc{githubscpred-cli.git,
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
33 author = {Andrey Solovyev, EBI Gene Expression Team},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
34 year = {2019},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
35 title = {scpred-cli: command line interface for ScPred tool},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
36 publisher = {GitHub},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
37 journal = {GitHub repository},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
38 url = {https://github.com/ebi-gene-expression-group/scpred-cli.git},
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
39 }
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
40 </citation>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
41 <citation type="doi">10.1101/2020.04.08.032698</citation>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
42 <yield />
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
43 </citations>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
44 </xml>
ec6d9a9fb273 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit c6a3af3aa798c106d1a8f3e2bf1aef5251d0bb7e"
ebi-gxa
parents:
diff changeset
45 </macros>