Mercurial > repos > ebi-gxa > scpred_traint_test_split
changeset 2:a6d66c9953ed draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
| author | ebi-gxa |
|---|---|
| date | Wed, 29 Apr 2020 12:43:32 -0400 |
| parents | 148fae20fe64 |
| children | 7aec34208f30 |
| files | scpred_train_test_split.xml |
| diffstat | 1 files changed, 11 insertions(+), 2 deletions(-) [+] |
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--- a/scpred_train_test_split.xml Fri Apr 24 11:28:11 2020 -0400 +++ b/scpred_train_test_split.xml Wed Apr 29 12:43:32 2020 -0400 @@ -1,11 +1,20 @@ -<tool id="scpred_traint_test_split" name="Scpred train-test split" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scpred_traint_test_split" name="Scpred train-test split" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>CPM normalise and partition into train/test data</description> <macros> <import>scpred_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_train_test_split.R --input-sce-object "${input_sce_object}" --normalised-counts-slot "${norm_counts_slot}" --training-matrix "${training_mat}" --test-matrix "${test_mat}" --cell-types-column "${cell_types_col}" --training-labels "${training_labs}" --test-labels "${test_labs}" --training-ratio "${training_ratio}" ]]></command> + scpred_train_test_split.R --input-sce-object "${input_sce_object}" --training-matrix "${training_mat}" --test-matrix "${test_mat}" --training-labels "${training_labs}" --cell-types-column "${cell_types_col}" --test-labels "${test_labs}" + + #if $norm_counts_slot + --normalised-counts-slot "${norm_counts_slot}" + #end if + #if $training_ratio + --training-ratio "${training_ratio}" + #end if + + ]]></command> <inputs> <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" /> <param type="text" name="norm_counts_slot" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />