Mercurial > repos > ebi-gxa > seurat_export_cellbrowser

diff seurat_export_cellbrowser.xml @ 5:249392cd0d99 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:28:44 +0000
parents e7d338f8c4fc
children
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--- a/seurat_export_cellbrowser.xml	Fri Nov 27 13:47:13 2020 +0000
+++ b/seurat_export_cellbrowser.xml	Fri Mar 04 07:28:44 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="seurat_export_cellbrowser" name="Seurat Export2CellBrowser" version="@SEURAT_VERSION@+galaxy0">
+<tool id="seurat_export_cellbrowser" name="Seurat Export2CellBrowser" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
     <description>produces files for UCSC CellBrowser import.</description>
     <macros>
         <import>seurat_macros.xml</import>
@@ -33,8 +33,13 @@
 
     <tests>
         <test>
-            <param name="rds_seurat_file" ftype="rdata" value="tsne_seurat.rds"/>
-            <output name="output" value="html_out" compare="sim_size" delta="1000000"/>
+            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-tsne.rds"/>
+            <param name="markers_file" ftype="txt" value="E-MTAB-6077-3k_features_90_cells-markers.csv"/>
+            <output name="output" >
+              <assert_contents>
+                <has_size value="2182656" delta="200000"/>
+              </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[