comparison seurat_find_markers.xml @ 5:3dd20b758756 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"

4:a1842dbe01cd

<tool id="seurat_find_markers" name="Seurat FindMarkers" version="@SEURAT_VERSION@+galaxy0">
    <description>find markers (differentially expressed genes)</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        <data name="output" format="csv" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Text file"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="cluster_seurat.rds"/>
            <output name="output" value="markers.csv" compare="sim_size" delta="1000000"/>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark

5:3dd20b758756

<tool id="seurat_find_markers" name="Seurat FindMarkers" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
    <description>find markers (differentially expressed genes)</description>
    <macros>
        <import>seurat_macros.xml</import>
    </macros>
    <expand macro="requirements" />

        <data name="output" format="csv" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Text file"/>
    </outputs>

    <tests>
        <test>
            <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-clusters.rds"/>
            <output name="output" >
              <assert_contents>
                <has_n_lines n="1038" />
              </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
.. class:: infomark