comparison seurat_read10x.xml @ 4:893ea1e1eed3 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"

3:948ce48561f9

<tool id="seurat_read10x" name="Seurat Read10x" version="@SEURAT_VERSION@+galaxy1">
<description>Loads Tabular or 10x data into a serialized seurat R object</description>
  <macros>
      <import>seurat_macros.xml</import>
  </macros>
  <expand macro="requirements" />

    <expand macro="output_files"/>
</outputs>

<tests>
    <test>
       <param name="matrix" ftype="txt" value="test_matrix.txt"/>
       <param name="genes" ftype="txt" value="test_genes.txt"/>
       <param name="barcodes" ftype="txt" value="test_barcodes.txt"/>
       <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/>
    </test>
</tests>


<help><![CDATA[

4:893ea1e1eed3

<tool id="seurat_read10x" name="Seurat Read10x" version="@SEURAT_VERSION@+galaxy0">
<description>Loads Tabular or 10x data into a serialized seurat R object</description>
  <macros>
      <import>seurat_macros.xml</import>
  </macros>
  <expand macro="requirements" />

    <expand macro="output_files"/>
</outputs>

<tests>
    <test>
       <param name="matrix" ftype="txt" value="test_data/matrix.mtx"/>
       <param name="genes" ftype="txt" value="test_data/genes.tsv"/>
       <param name="barcodes" ftype="txt" value="test_data/barcodes.tsv"/>
       <output name="rds_seurat_file" ftype="rdata" value="raw_seurat.rds" compare="sim_size" delta="1000000" />
    </test>
</tests>


<help><![CDATA[