Mercurial > repos > ebi-gxa > seurat_read10x
comparison seurat_read10x.xml @ 3:948ce48561f9 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit f3077a71c898b86794a0d630d11334788b797f2f"
| author | ebi-gxa |
|---|---|
| date | Sat, 11 Jul 2020 08:43:41 -0400 |
| parents | 2d121013176f |
| children | 893ea1e1eed3 |
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| 2:2d121013176f | 3:948ce48561f9 |
|---|---|
| 11 | 11 |
| 12 #if str($input.format) == "mtx": | 12 #if str($input.format) == "mtx": |
| 13 ln -s "$matrix" matrix.mtx; | 13 ln -s "$matrix" matrix.mtx; |
| 14 ln -s "$genes" genes.tsv; | 14 ln -s "$genes" genes.tsv; |
| 15 ln -s "$barcodes" barcodes.tsv; | 15 ln -s "$barcodes" barcodes.tsv; |
| 16 # end if | 16 #end if |
| 17 | 17 |
| 18 seurat-read-10x.R | 18 seurat-read-10x.R |
| 19 #if str($input.format) == "mtx": | 19 #if str($input.format) == "mtx": |
| 20 -d ./ | 20 -d ./ |
| 21 #else | 21 #else |
| 22 -f $input.file | 22 -f $input.file |
| 23 # end if | 23 #end if |
| 24 #if $metadata | 24 #if $metadata |
| 25 --metadata '$metadata' | 25 --metadata '$metadata' |
| 26 #end if | 26 #end if |
| 27 #if $min_cells | 27 #if $min_cells |
| 28 --min-cells '$min_cells' | 28 --min-cells '$min_cells' |