Mercurial > repos > ebi-gxa > seurat_read10x
comparison seurat_read10x.xml @ 3:948ce48561f9 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit f3077a71c898b86794a0d630d11334788b797f2f"
author | ebi-gxa |
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date | Sat, 11 Jul 2020 08:43:41 -0400 |
parents | 2d121013176f |
children | 893ea1e1eed3 |
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2:2d121013176f | 3:948ce48561f9 |
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11 | 11 |
12 #if str($input.format) == "mtx": | 12 #if str($input.format) == "mtx": |
13 ln -s "$matrix" matrix.mtx; | 13 ln -s "$matrix" matrix.mtx; |
14 ln -s "$genes" genes.tsv; | 14 ln -s "$genes" genes.tsv; |
15 ln -s "$barcodes" barcodes.tsv; | 15 ln -s "$barcodes" barcodes.tsv; |
16 # end if | 16 #end if |
17 | 17 |
18 seurat-read-10x.R | 18 seurat-read-10x.R |
19 #if str($input.format) == "mtx": | 19 #if str($input.format) == "mtx": |
20 -d ./ | 20 -d ./ |
21 #else | 21 #else |
22 -f $input.file | 22 -f $input.file |
23 # end if | 23 #end if |
24 #if $metadata | 24 #if $metadata |
25 --metadata '$metadata' | 25 --metadata '$metadata' |
26 #end if | 26 #end if |
27 #if $min_cells | 27 #if $min_cells |
28 --min-cells '$min_cells' | 28 --min-cells '$min_cells' |