Mercurial > repos > ebi-gxa > seurat_read10x
changeset 4:893ea1e1eed3 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
| author | ebi-gxa |
|---|---|
| date | Fri, 27 Nov 2020 13:49:07 +0000 |
| parents | 948ce48561f9 |
| children | 301cf1b4b43d |
| files | seurat_macros.xml seurat_read10x.xml |
| diffstat | 2 files changed, 8 insertions(+), 7 deletions(-) [+] |
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--- a/seurat_macros.xml Sat Jul 11 08:43:41 2020 -0400 +++ b/seurat_macros.xml Fri Nov 27 13:49:07 2020 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> - <token name="@VERSION@">0.0.7</token> - <token name="@SEURAT_VERSION@">3.1.1</token> + <token name="@VERSION@">0.0.8</token> + <token name="@SEURAT_VERSION@">3.1.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">seurat-scripts</requirement> @@ -96,6 +96,7 @@ <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +3.1.2_0.0.8: Upd ate metadata parsing 3.1.1_0.0.7: Exposes perplexity and enables tab input.
--- a/seurat_read10x.xml Sat Jul 11 08:43:41 2020 -0400 +++ b/seurat_read10x.xml Fri Nov 27 13:49:07 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="seurat_read10x" name="Seurat Read10x" version="@SEURAT_VERSION@+galaxy1"> +<tool id="seurat_read10x" name="Seurat Read10x" version="@SEURAT_VERSION@+galaxy0"> <description>Loads Tabular or 10x data into a serialized seurat R object</description> <macros> <import>seurat_macros.xml</import> @@ -60,10 +60,10 @@ <tests> <test> - <param name="matrix" ftype="txt" value="test_matrix.txt"/> - <param name="genes" ftype="txt" value="test_genes.txt"/> - <param name="barcodes" ftype="txt" value="test_barcodes.txt"/> - <output name="rds_seurat_file" ftype="rdata" value="out_scale.rds" compare="sim_size"/> + <param name="matrix" ftype="txt" value="test_data/matrix.mtx"/> + <param name="genes" ftype="txt" value="test_data/genes.tsv"/> + <param name="barcodes" ftype="txt" value="test_data/barcodes.tsv"/> + <output name="rds_seurat_file" ftype="rdata" value="raw_seurat.rds" compare="sim_size" delta="1000000" /> </test> </tests>