Mercurial > repos > ebi-gxa > seurat_run_pca

comparison seurat_macros.xml @ 5:9547ebb03f6f draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:29:26 +0000
parents 3fd59cdcb477
children 8ded486b0014
comparison
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4:3fd59cdcb477 5:9547ebb03f6f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@VERSION@">0.0.8</token> 3 <token name="@VERSION@">0.3.0</token>
4 <token name="@SEURAT_VERSION@">3.1.2</token> 4 <token name="@SEURAT_VERSION@">3.2.3</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@VERSION@">seurat-scripts</requirement> 7 <requirement type="package" version="@VERSION@">seurat-scripts</requirement>
8 </requirements> 8 </requirements>
9 </xml> 9 </xml>
94 types of single cell data. 94 types of single cell data.
95 ]]></token> 95 ]]></token>
96 96
97 <token name="@VERSION_HISTORY@"><![CDATA[ 97 <token name="@VERSION_HISTORY@"><![CDATA[
98 **Version history** 98 **Version history**
99 3.1.2_0.0.8: Upd ate metadata parsing 99
100 3.2.3+galaxy0: Moves to Seurat 3.2.3 and introduce convert method, improving format interconversion support.
101
102 3.1.2_0.0.8: Update metadata parsing
100 103
101 3.1.1_0.0.7: Exposes perplexity and enables tab input. 104 3.1.1_0.0.7: Exposes perplexity and enables tab input.
102 105
103 3.1.1_0.0.6+galaxy0: Moved to Seurat 3. 106 3.1.1_0.0.6+galaxy0: Moved to Seurat 3.
104 107
105 Find clusters: removed dims-use, k-param, prune-snn. 108 Find clusters: removed dims-use, k-param, prune-snn.
106 109
107 2.3.1+galaxy0: Improved documentation and further exposition of all script's options. Pablo Moreno, Jonathan Manning and Ni Huang, Expression Atlas team https://www.ebi.ac.uk/gxa/home at 110 2.3.1+galaxy0: Improved documentation and further exposition of all script's options. Pablo Moreno, Jonathan Manning and Ni Huang, Expression Atlas team https://www.ebi.ac.uk/gxa/home at
108 EMBL-EBI https://www.ebi.ac.uk/. Parts obtained from wrappers from Christophe Antoniewski(https://github.com/drosofff) and Lea Bellenger(https://github.com/bellenger-l). 111 EMBL-EBI https://www.ebi.ac.uk/. Parts obtained from wrappers from Christophe Antoniewski(github.com/drosofff) and Lea Bellenger(github.com/bellenger-l).
109 112
110 0.0.1: Initial contribution. Maria Doyle, https://github.com/mblue9. 113 0.0.1: Initial contribution. Maria Doyle (github.com/mblue9).
111 ]]></token> 114 ]]></token>
112 115
113 116
114 <xml name="citations"> 117 <xml name="citations">
115 <citations> 118 <citations>
122 publisher = {GitHub}, 125 publisher = {GitHub},
123 journal = {GitHub repository}, 126 journal = {GitHub repository},
124 url = {https://github.com/ebi-gene-expression-group/r-seurat-scripts.git}, 127 url = {https://github.com/ebi-gene-expression-group/r-seurat-scripts.git},
125 } 128 }
126 </citation> 129 </citation>
127 <citation type="doi">10.1101/2020.04.08.032698</citation> 130 <citation type="doi">10.1038/s41592-021-01102-w</citation>
128 </citations> 131 </citations>
129 </xml> 132 </xml>
130 </macros> 133 </macros>