Mercurial > repos > ebi-gxa > seurat_run_pca
diff seurat_run_pca.xml @ 5:9547ebb03f6f draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
| author | ebi-gxa |
|---|---|
| date | Fri, 04 Mar 2022 07:29:26 +0000 |
| parents | 3fd59cdcb477 |
| children |
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--- a/seurat_run_pca.xml Fri Nov 27 13:49:23 2020 +0000 +++ b/seurat_run_pca.xml Fri Mar 04 07:29:26 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="seurat_run_pca" name="Seurat RunPCA" version="@SEURAT_VERSION@+galaxy0"> +<tool id="seurat_run_pca" name="Seurat RunPCA" profile="18.01" version="@SEURAT_VERSION@+galaxy0"> <description>run a PCA dimensionality reduction</description> <macros> <import>seurat_macros.xml</import> @@ -46,11 +46,27 @@ <tests> <test> - <param name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds"/> - <output name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds" compare="sim_size" delta="10000000"/> - <output name="output_embed" value="pca_embeddings.csv" compare="sim_size" delta="10000000" /> - <output name="output_load" value="pca_loadings.csv" compare="sim_size" delta="10000000" /> - <output name="output_sdev" value="pca_stdev.txt" compare="sim_size" delta="10000000" /> + <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-scaled.rds"/> + <output name="rds_seurat_file" ftype="rdata"> + <assert_contents> + <has_size value="5052296" delta="200000"/> + </assert_contents> + </output> + <output name="output_embed" > + <assert_contents> + <has_n_lines n="92"/> + </assert_contents> + </output> + <output name="output_load" > + <assert_contents> + <has_n_lines n="2001"/> + </assert_contents> + </output> + <output name="output_sdev" > + <assert_contents> + <has_n_lines n="50"/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[